Bio.Emboss 包
子模块
- Bio.Emboss.Applications 模块
Primer3CommandlinePrimer3Commandline.__init__()Primer3Commandline.autoPrimer3Commandline.debugPrimer3Commandline.diePrimer3Commandline.dnaconcPrimer3Commandline.errorPrimer3Commandline.excludedregionPrimer3Commandline.explainflagPrimer3Commandline.filterPrimer3Commandline.forwardinputPrimer3Commandline.gcclampPrimer3Commandline.helpPrimer3Commandline.hybridprobePrimer3Commandline.includedregionPrimer3Commandline.maxdifftmPrimer3Commandline.maxgcPrimer3Commandline.maxmisprimingPrimer3Commandline.maxpolyxPrimer3Commandline.maxsizePrimer3Commandline.maxtmPrimer3Commandline.mingcPrimer3Commandline.minsizePrimer3Commandline.mintmPrimer3Commandline.mishyblibraryfilePrimer3Commandline.mispriminglibraryfilePrimer3Commandline.numreturnPrimer3Commandline.oanyselfPrimer3Commandline.odnaconcPrimer3Commandline.oendselfPrimer3Commandline.oexcludedregionPrimer3Commandline.ogcmaxPrimer3Commandline.ogcminPrimer3Commandline.ogcoptPrimer3Commandline.ogcpercentPrimer3Commandline.oligoinputPrimer3Commandline.omaxsizePrimer3Commandline.ominsizePrimer3Commandline.omishybmaxPrimer3Commandline.opolyxmaxPrimer3Commandline.optionsPrimer3Commandline.opttmPrimer3Commandline.osaltconcPrimer3Commandline.osizePrimer3Commandline.osizeoptPrimer3Commandline.otmPrimer3Commandline.otmmaxPrimer3Commandline.otmminPrimer3Commandline.otmoptPrimer3Commandline.outfilePrimer3Commandline.prangePrimer3Commandline.psizeoptPrimer3Commandline.ptmmaxPrimer3Commandline.ptmminPrimer3Commandline.ptmoptPrimer3Commandline.reverseinputPrimer3Commandline.saltconcPrimer3Commandline.sequencePrimer3Commandline.stdoutPrimer3Commandline.targetPrimer3Commandline.taskPrimer3Commandline.verbosePrimer3Commandline.warning
PrimerSearchCommandlinePrimerSearchCommandline.__init__()PrimerSearchCommandline.autoPrimerSearchCommandline.debugPrimerSearchCommandline.diePrimerSearchCommandline.errorPrimerSearchCommandline.filterPrimerSearchCommandline.helpPrimerSearchCommandline.infilePrimerSearchCommandline.mismatchpercentPrimerSearchCommandline.optionsPrimerSearchCommandline.outfilePrimerSearchCommandline.seqallPrimerSearchCommandline.snucleotidePrimerSearchCommandline.sproteinPrimerSearchCommandline.stdoutPrimerSearchCommandline.verbosePrimerSearchCommandline.warning
FDNADistCommandlineFDNADistCommandline.__init__()FDNADistCommandline.autoFDNADistCommandline.basefreqFDNADistCommandline.categoriesFDNADistCommandline.debugFDNADistCommandline.dieFDNADistCommandline.errorFDNADistCommandline.filterFDNADistCommandline.freqsfromFDNADistCommandline.gammaFDNADistCommandline.gammacoefficientFDNADistCommandline.helpFDNADistCommandline.invarfracFDNADistCommandline.lowerFDNADistCommandline.methodFDNADistCommandline.ncategoriesFDNADistCommandline.optionsFDNADistCommandline.outfileFDNADistCommandline.rateFDNADistCommandline.sequenceFDNADistCommandline.stdoutFDNADistCommandline.ttratioFDNADistCommandline.verboseFDNADistCommandline.warningFDNADistCommandline.weights
FTreeDistCommandlineFTreeDistCommandline.__init__()FTreeDistCommandline.autoFTreeDistCommandline.debugFTreeDistCommandline.dieFTreeDistCommandline.dtypeFTreeDistCommandline.errorFTreeDistCommandline.filterFTreeDistCommandline.helpFTreeDistCommandline.intreefileFTreeDistCommandline.norootFTreeDistCommandline.optionsFTreeDistCommandline.outfileFTreeDistCommandline.outgrnoFTreeDistCommandline.pairingFTreeDistCommandline.stdoutFTreeDistCommandline.styleFTreeDistCommandline.verboseFTreeDistCommandline.warning
FNeighborCommandlineFNeighborCommandline.__init__()FNeighborCommandline.autoFNeighborCommandline.datafileFNeighborCommandline.debugFNeighborCommandline.dieFNeighborCommandline.errorFNeighborCommandline.filterFNeighborCommandline.helpFNeighborCommandline.jumbleFNeighborCommandline.matrixtypeFNeighborCommandline.optionsFNeighborCommandline.outfileFNeighborCommandline.outgrnoFNeighborCommandline.outtreefileFNeighborCommandline.progressFNeighborCommandline.seedFNeighborCommandline.stdoutFNeighborCommandline.treeprintFNeighborCommandline.treetypeFNeighborCommandline.troutFNeighborCommandline.verboseFNeighborCommandline.warning
FSeqBootCommandlineFSeqBootCommandline.__init__()FSeqBootCommandline.autoFSeqBootCommandline.blocksizeFSeqBootCommandline.catergoriesFSeqBootCommandline.debugFSeqBootCommandline.dieFSeqBootCommandline.dotdiffFSeqBootCommandline.errorFSeqBootCommandline.filterFSeqBootCommandline.fracsampleFSeqBootCommandline.helpFSeqBootCommandline.jusweightsFSeqBootCommandline.optionsFSeqBootCommandline.outfileFSeqBootCommandline.regularFSeqBootCommandline.repsFSeqBootCommandline.rewriteformatFSeqBootCommandline.seedFSeqBootCommandline.seqtypeFSeqBootCommandline.sequenceFSeqBootCommandline.stdoutFSeqBootCommandline.testFSeqBootCommandline.verboseFSeqBootCommandline.warningFSeqBootCommandline.weights
FDNAParsCommandlineFDNAParsCommandline.__init__()FDNAParsCommandline.autoFDNAParsCommandline.debugFDNAParsCommandline.dieFDNAParsCommandline.dotdiffFDNAParsCommandline.errorFDNAParsCommandline.filterFDNAParsCommandline.helpFDNAParsCommandline.intreefileFDNAParsCommandline.maxtreesFDNAParsCommandline.njumbleFDNAParsCommandline.optionsFDNAParsCommandline.outfileFDNAParsCommandline.outgrnoFDNAParsCommandline.outtreefileFDNAParsCommandline.rearrangeFDNAParsCommandline.seedFDNAParsCommandline.sequenceFDNAParsCommandline.stdoutFDNAParsCommandline.thoroughFDNAParsCommandline.threshFDNAParsCommandline.thresholdFDNAParsCommandline.transversionFDNAParsCommandline.troutFDNAParsCommandline.verboseFDNAParsCommandline.warningFDNAParsCommandline.weights
FProtParsCommandlineFProtParsCommandline.__init__()FProtParsCommandline.autoFProtParsCommandline.debugFProtParsCommandline.dieFProtParsCommandline.dotdiffFProtParsCommandline.errorFProtParsCommandline.filterFProtParsCommandline.helpFProtParsCommandline.intreefileFProtParsCommandline.njumbleFProtParsCommandline.optionsFProtParsCommandline.outfileFProtParsCommandline.outgrnoFProtParsCommandline.outtreefileFProtParsCommandline.seedFProtParsCommandline.sequenceFProtParsCommandline.stdoutFProtParsCommandline.threshFProtParsCommandline.thresholdFProtParsCommandline.troutFProtParsCommandline.verboseFProtParsCommandline.warningFProtParsCommandline.weightsFProtParsCommandline.whichcode
FProtDistCommandlineFProtDistCommandline.__init__()FProtDistCommandline.aacategFProtDistCommandline.autoFProtDistCommandline.basefreqFProtDistCommandline.catergoriesFProtDistCommandline.debugFProtDistCommandline.dieFProtDistCommandline.easeFProtDistCommandline.errorFProtDistCommandline.filterFProtDistCommandline.gammaFProtDistCommandline.gammacoefficientFProtDistCommandline.helpFProtDistCommandline.invarcoefficientFProtDistCommandline.methodFProtDistCommandline.ncategoriesFProtDistCommandline.optionsFProtDistCommandline.outfileFProtDistCommandline.rateFProtDistCommandline.sequenceFProtDistCommandline.stdoutFProtDistCommandline.ttratioFProtDistCommandline.verboseFProtDistCommandline.warningFProtDistCommandline.weightsFProtDistCommandline.whichcode
FConsenseCommandlineFConsenseCommandline.__init__()FConsenseCommandline.autoFConsenseCommandline.debugFConsenseCommandline.dieFConsenseCommandline.errorFConsenseCommandline.filterFConsenseCommandline.helpFConsenseCommandline.intreefileFConsenseCommandline.methodFConsenseCommandline.mlfracFConsenseCommandline.optionsFConsenseCommandline.outfileFConsenseCommandline.outgrnoFConsenseCommandline.outtreefileFConsenseCommandline.rootFConsenseCommandline.stdoutFConsenseCommandline.troutFConsenseCommandline.verboseFConsenseCommandline.warning
WaterCommandlineWaterCommandline.__init__()WaterCommandline.aformatWaterCommandline.asequenceWaterCommandline.autoWaterCommandline.briefWaterCommandline.bsequenceWaterCommandline.datafileWaterCommandline.debugWaterCommandline.dieWaterCommandline.errorWaterCommandline.filterWaterCommandline.gapextendWaterCommandline.gapopenWaterCommandline.helpWaterCommandline.nobriefWaterCommandline.optionsWaterCommandline.outfileWaterCommandline.similarityWaterCommandline.snucleotideWaterCommandline.sproteinWaterCommandline.stdoutWaterCommandline.verboseWaterCommandline.warning
NeedleCommandlineNeedleCommandline.__init__()NeedleCommandline.aformatNeedleCommandline.asequenceNeedleCommandline.autoNeedleCommandline.briefNeedleCommandline.bsequenceNeedleCommandline.datafileNeedleCommandline.debugNeedleCommandline.dieNeedleCommandline.endextendNeedleCommandline.endopenNeedleCommandline.endweightNeedleCommandline.errorNeedleCommandline.filterNeedleCommandline.gapextendNeedleCommandline.gapopenNeedleCommandline.helpNeedleCommandline.nobriefNeedleCommandline.optionsNeedleCommandline.outfileNeedleCommandline.similarityNeedleCommandline.snucleotideNeedleCommandline.sproteinNeedleCommandline.stdoutNeedleCommandline.verboseNeedleCommandline.warning
NeedleallCommandlineNeedleallCommandline.__init__()NeedleallCommandline.aformatNeedleallCommandline.asequenceNeedleallCommandline.autoNeedleallCommandline.briefNeedleallCommandline.bsequenceNeedleallCommandline.datafileNeedleallCommandline.debugNeedleallCommandline.dieNeedleallCommandline.endextendNeedleallCommandline.endopenNeedleallCommandline.endweightNeedleallCommandline.errorNeedleallCommandline.errorfileNeedleallCommandline.filterNeedleallCommandline.gapextendNeedleallCommandline.gapopenNeedleallCommandline.helpNeedleallCommandline.minscoreNeedleallCommandline.nobriefNeedleallCommandline.optionsNeedleallCommandline.outfileNeedleallCommandline.similarityNeedleallCommandline.snucleotideNeedleallCommandline.sproteinNeedleallCommandline.stdoutNeedleallCommandline.verboseNeedleallCommandline.warning
StretcherCommandlineStretcherCommandline.__init__()StretcherCommandline.aformatStretcherCommandline.asequenceStretcherCommandline.autoStretcherCommandline.bsequenceStretcherCommandline.datafileStretcherCommandline.debugStretcherCommandline.dieStretcherCommandline.errorStretcherCommandline.filterStretcherCommandline.gapextendStretcherCommandline.gapopenStretcherCommandline.helpStretcherCommandline.optionsStretcherCommandline.outfileStretcherCommandline.snucleotideStretcherCommandline.sproteinStretcherCommandline.stdoutStretcherCommandline.verboseStretcherCommandline.warning
FuzznucCommandlineFuzznucCommandline.__init__()FuzznucCommandline.autoFuzznucCommandline.complementFuzznucCommandline.debugFuzznucCommandline.dieFuzznucCommandline.errorFuzznucCommandline.filterFuzznucCommandline.helpFuzznucCommandline.optionsFuzznucCommandline.outfileFuzznucCommandline.patternFuzznucCommandline.pmismatchFuzznucCommandline.rformatFuzznucCommandline.sequenceFuzznucCommandline.stdoutFuzznucCommandline.verboseFuzznucCommandline.warning
FuzzproCommandlineFuzzproCommandline.__init__()FuzzproCommandline.autoFuzzproCommandline.debugFuzzproCommandline.dieFuzzproCommandline.errorFuzzproCommandline.filterFuzzproCommandline.helpFuzzproCommandline.optionsFuzzproCommandline.outfileFuzzproCommandline.patternFuzzproCommandline.pmismatchFuzzproCommandline.rformatFuzzproCommandline.sequenceFuzzproCommandline.stdoutFuzzproCommandline.verboseFuzzproCommandline.warning
Est2GenomeCommandlineEst2GenomeCommandline.__init__()Est2GenomeCommandline.alignEst2GenomeCommandline.autoEst2GenomeCommandline.bestEst2GenomeCommandline.debugEst2GenomeCommandline.dieEst2GenomeCommandline.errorEst2GenomeCommandline.estEst2GenomeCommandline.filterEst2GenomeCommandline.gappenaltyEst2GenomeCommandline.genomeEst2GenomeCommandline.helpEst2GenomeCommandline.intronpenaltyEst2GenomeCommandline.matchEst2GenomeCommandline.minscoreEst2GenomeCommandline.mismatchEst2GenomeCommandline.modeEst2GenomeCommandline.optionsEst2GenomeCommandline.outfileEst2GenomeCommandline.reverseEst2GenomeCommandline.seedEst2GenomeCommandline.shuffleEst2GenomeCommandline.spaceEst2GenomeCommandline.spliceEst2GenomeCommandline.splicepenaltyEst2GenomeCommandline.stdoutEst2GenomeCommandline.verboseEst2GenomeCommandline.warningEst2GenomeCommandline.width
ETandemCommandlineETandemCommandline.__init__()ETandemCommandline.autoETandemCommandline.debugETandemCommandline.dieETandemCommandline.errorETandemCommandline.filterETandemCommandline.helpETandemCommandline.maxrepeatETandemCommandline.minrepeatETandemCommandline.mismatchETandemCommandline.optionsETandemCommandline.outfileETandemCommandline.rformatETandemCommandline.sequenceETandemCommandline.stdoutETandemCommandline.thresholdETandemCommandline.uniformETandemCommandline.verboseETandemCommandline.warning
EInvertedCommandlineEInvertedCommandline.__init__()EInvertedCommandline.autoEInvertedCommandline.debugEInvertedCommandline.dieEInvertedCommandline.errorEInvertedCommandline.filterEInvertedCommandline.gapEInvertedCommandline.helpEInvertedCommandline.matchEInvertedCommandline.maxrepeatEInvertedCommandline.mismatchEInvertedCommandline.optionsEInvertedCommandline.outfileEInvertedCommandline.sequenceEInvertedCommandline.stdoutEInvertedCommandline.thresholdEInvertedCommandline.verboseEInvertedCommandline.warning
PalindromeCommandlinePalindromeCommandline.__init__()PalindromeCommandline.autoPalindromeCommandline.debugPalindromeCommandline.diePalindromeCommandline.errorPalindromeCommandline.filterPalindromeCommandline.gaplimitPalindromeCommandline.helpPalindromeCommandline.maxpallenPalindromeCommandline.minpallenPalindromeCommandline.nummismatchesPalindromeCommandline.optionsPalindromeCommandline.outfilePalindromeCommandline.overlapPalindromeCommandline.sequencePalindromeCommandline.stdoutPalindromeCommandline.verbosePalindromeCommandline.warning
TranalignCommandlineTranalignCommandline.__init__()TranalignCommandline.asequenceTranalignCommandline.autoTranalignCommandline.bsequenceTranalignCommandline.debugTranalignCommandline.dieTranalignCommandline.errorTranalignCommandline.filterTranalignCommandline.helpTranalignCommandline.optionsTranalignCommandline.outfileTranalignCommandline.outseqTranalignCommandline.stdoutTranalignCommandline.tableTranalignCommandline.verboseTranalignCommandline.warning
DiffseqCommandlineDiffseqCommandline.__init__()DiffseqCommandline.aoutfeatDiffseqCommandline.asequenceDiffseqCommandline.autoDiffseqCommandline.boutfeatDiffseqCommandline.bsequenceDiffseqCommandline.debugDiffseqCommandline.dieDiffseqCommandline.errorDiffseqCommandline.filterDiffseqCommandline.helpDiffseqCommandline.optionsDiffseqCommandline.outfileDiffseqCommandline.rformatDiffseqCommandline.stdoutDiffseqCommandline.verboseDiffseqCommandline.warningDiffseqCommandline.wordsize
IepCommandlineIepCommandline.__init__()IepCommandline.aminoIepCommandline.autoIepCommandline.carboxylIepCommandline.debugIepCommandline.dieIepCommandline.disulphidesIepCommandline.errorIepCommandline.filterIepCommandline.helpIepCommandline.lysinemodifiedIepCommandline.noterminiIepCommandline.optionsIepCommandline.outfileIepCommandline.sequenceIepCommandline.stdoutIepCommandline.verboseIepCommandline.warning
SeqretCommandlineSeqretCommandline.__init__()SeqretCommandline.autoSeqretCommandline.debugSeqretCommandline.dieSeqretCommandline.errorSeqretCommandline.filterSeqretCommandline.helpSeqretCommandline.optionsSeqretCommandline.osformatSeqretCommandline.outseqSeqretCommandline.sequenceSeqretCommandline.sformatSeqretCommandline.stdoutSeqretCommandline.verboseSeqretCommandline.warning
SeqmatchallCommandlineSeqmatchallCommandline.__init__()SeqmatchallCommandline.aformatSeqmatchallCommandline.autoSeqmatchallCommandline.debugSeqmatchallCommandline.dieSeqmatchallCommandline.errorSeqmatchallCommandline.filterSeqmatchallCommandline.helpSeqmatchallCommandline.optionsSeqmatchallCommandline.outfileSeqmatchallCommandline.sequenceSeqmatchallCommandline.stdoutSeqmatchallCommandline.verboseSeqmatchallCommandline.warningSeqmatchallCommandline.wordsize
- Bio.Emboss.Primer3 模块
- Bio.Emboss.PrimerSearch 模块
模块内容
与非常有用的 EMBOSS 程序交互的代码。